Publications

Journals and Pre-print:

  1. A novel and effective scoring scheme for structure classification and pairwise similarity measurement[pdf]
    Rezaul Karim, Md Aziz, Momin Al, Swakkhar Shatabda, M Sohel Rahman
    arXiv preprint arXiv:1610.01052, 2016
  2. Efficient conformational space exploration in ab initio protein folding simulation. [pdf] [link]
    Ahammed Ullah, Nasif Ahmed, Subrata Dey Pappu, Swakkhar Shatabda, A. Z. M. Dayem Ullah, M. Sohel Rahman
    Royal Society Open Science, 2(8), 150238, 2015
  3. Comograd and phog: From computer vision to fast and accurate protein tertiary structure retrieval. [pdf] [link]
    Rezaul Karim, Mohd Momin Al Aziz, Swakkhar Shatabda, M Sohel Rahman, Md Abul Kashem Mia, Farhana Zaman, Salman Rakin
    Scientific Reports 5: 13275. 2015

Conference Papers:

  1. CylcoAnt: Sequencing Cyclic Peptides Using Hybrid Ants.
    Sujata Baral, Swakkhar Shatabda , Mahmood A Rashid
    (accepted in Gecco 2017)
  2. A new effective algorithm for protein chain lattice fit problem.
    Farhan Anan Himu, Khushnur Binte Jahangir, Md Ziauddin Ridoy, Shayantonee Dhar, Swakkhar Shatabda
    IEEE International WIE Conference on Electrical and Computer Engineering (WIECON-ECE), 2015
  3. GreMuTRRR: A novel genetic algorithm to solve distance geometry problem for protein structures
    Md Lisul Islam, Swakkhar Shatabda, M Sohel Rahman
    8th International Conference on Electrical and Computer Engineering, 2014
  4. Constraint-Based Evolutionary Local Search for Protein Structures with Secondary Motifs
    Swakkhar Shatabda, MA Hakim Newton, Abdul Sattar
    Pacific Rim International Conference on Artificial Intelligence, 2014